YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23099904, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSKHSHAEQ QTADPSLVSQ LQQDHIEEIS PWKETLSSLF KSRLAIVGII ILFLFLVIAI  60
   61 IGPLLTPYDY AEQDLTNRLQ SPSSEHLLGT DHIGRDIATR IIYGASVSLQ VGFYAVTGAL 120
  121 LFGTLLGIIA GFFGKWVDMI ISRMFDILLA FPSILLAIAI VAILGPSLEN ALVAIAIVNI 180
  181 PIFGRLVRSK VISLREEEYI MAARAQGMKN GRIIFQHILP NSTAPIIVQA TLSFGTAIIE 240
  241 AAALGFLGLG AQHPTPEWGR MLADGRAFLQ LAPWTLIAPG LCIMLVVLAF NLIGDGLRDA 300
  301 LDPKMKH

Type	Start	End	Confidence
Cytoplasmic	1	43	0.97
Transmembrane Helix	44	65	0.91
Non-Cytoplasmic	66	112	0.96
Transmembrane Helix	113	134	0.94
Cytoplasmic	135	143	0.84
Transmembrane Helix	144	164	0.93
Non-Cytoplasmic	165	170	0.76
Transmembrane Helix	171	187	0.91
Cytoplasmic	188	225	0.82
Transmembrane Helix	226	251	0.79
Non-Cytoplasmic	252	270	0.83
Transmembrane Helix	271	294	0.89
Cytoplasmic	295	307	0.83