YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23099388, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.66
Transmembrane Helix	8	27	0.86
Cytoplasmic	28	44	0.73
Transmembrane Helix	45	66	0.82
Non-Cytoplasmic	67	82	0.53
Transmembrane Helix	83	105	0.77
Cytoplasmic	106	111	0.45
Transmembrane Helix	112	127	0.84
Non-Cytoplasmic	128	133	0.61
Transmembrane Helix	134	156	0.83
Cytoplasmic	157	176	0.76
Transmembrane Helix	177	199	0.86
Non-Cytoplasmic	200	216	0.77
Transmembrane Helix	217	239	0.82
Cytoplasmic	240	247	0.76
Transmembrane Helix	248	270	0.89
Non-Cytoplasmic	271	290	0.82
Transmembrane Helix	291	310	0.84
Cytoplasmic	311	542	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIDVQKLII EFIGGLGIFL LGIKYMGDGL QKSAGDRLRN ILDRFTSNPF LGVLAGMIVT  60
   61 ILIQSSSGTT VLTVGLVNAG FMTLRQAIGV IMGANIGTTV TAFIIGIDLG EYALLIMALG 120
  121 AFLLFFFKKP IVNAVGQAVF GFGSLFFGLE LMSSGMSPLR SLEAFHELTL SMSDTPILGV 180
  181 VIGTVFTLIV QSSSATIGIL QGLYSEGAIE LGAALPVLFG DNLGTTITAI IASIGASVAA 240
  241 KRAALTHVTF NLIGATIFLL LLIPFTNYVA FLQDWLNLNP EMTIAFGHGS FNIANTVLQF 300
  301 PFIAALAWFV TKLIPGDDTI IEYKPKHLDP IFIQQSSSLA LDQAKAEVVR MGGYAHKGLE 360
  361 ETHSYVTTQN EKNSEMALQI EGALNNLDRK ITDYLVEIAS TSLSEVESAE HTALMNTVRD 420
  421 IERIGDHFEN IVELIDYKMS NKVILTDQAM ENLNNMFDLT AMTVKQAIES LESKDREAAL 480
  481 EVIQKEDQID KMERKFRKSH IIRMNEGLCN GSAGIVFVDI ISNLERIGDH AVNIAENVLG 540
  541 EQ