YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22777607, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYINDVYVEY QLAYQLLEQG FELINKNEET DELWFEKFKN NTSVIIRLIP KRFDWDNQLK  60
   61 QDVTNTYQRI HQMRKMFKGK HIEAITIYTS SEEPIGDDWQ TLKKPITSNA KKPFTMNVYF 120
  121 LHESTFSDEI ERLREKIGLD LSMDELNELD DEQKESKVNY FKQTIFHDYN NRIEKRRKVF 180
  181 SNGKPLFTYI LIALNLFFFL QQINNGGSEN IDTLIQMGAK YNPLIMEGEW WRLLTSMFLH 240
  241 IGFVHILMNM VALFYLGTAV ERIFGRTRFL VIYFLGGIAG SIASFATSIS ISAGASGAIF 300
  301 GLFGALLFFG LIYKDVFKDT MGMNIVFILV VNLVIGFSIP EIDMGAHLGG LLGGFLIAAC 360
  361 LYVPGKKNGK YQLGAIIAFI ILCSGLLMYG FDNNASSLEF KLIEVEEKLS DNQFEEAIDL 420
  421 STNALNELKS TNDNELVPYF LFHRSYAYLQ QDEIELAQAD LEESLNYDET IPEAYNNLTI 480
  481 IYANNFEFDK ANEIIDEGLE RFPENQELLD LQQDLSNY

Type	Start	End	Confidence
Cytoplasmic	1	184	0.98
Transmembrane Helix	185	203	0.91
Non-Cytoplasmic	204	235	0.96
Transmembrane Helix	236	258	0.90
Cytoplasmic	259	268	0.82
Transmembrane Helix	269	287	0.95
Non-Cytoplasmic	288	292	0.67
Transmembrane Helix	293	313	0.91
Cytoplasmic	314	319	0.91
Transmembrane Helix	320	339	0.93
Non-Cytoplasmic	340	344	0.83
Transmembrane Helix	345	365	0.91
Cytoplasmic	366	372	0.82
Transmembrane Helix	373	391	0.97
Non-Cytoplasmic	392	518	0.99