YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23099337, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.82
Transmembrane Helix	15	36	0.82
Non-Cytoplasmic	37	73	0.71
Transmembrane Helix	74	100	0.78
Cytoplasmic	101	120	0.51
Transmembrane Helix	121	148	0.80
Non-Cytoplasmic	149	167	0.58
Transmembrane Helix	168	188	0.96
Cytoplasmic	189	206	0.55
Transmembrane Helix	207	230	0.74
Non-Cytoplasmic	231	270	0.78
Transmembrane Helix	271	292	0.86
Cytoplasmic	293	300	0.82
Transmembrane Helix	301	319	0.93
Non-Cytoplasmic	320	325	0.71
Transmembrane Helix	326	345	0.84
Cytoplasmic	346	349	0.60
Transmembrane Helix	350	372	0.83
Non-Cytoplasmic	373	377	0.78
Transmembrane Helix	378	400	0.88
Cytoplasmic	401	675	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKAFGLLQ KIGKALMLPV ALLPVAGLLL GLGNAVQQNT VLEYLPFLHM EWIQLIATVM  60
   61 EDAGGIIFDN LPLIFAIGVS IGLASDGAAG LAALVGYLVL NQVMGSWIGV TSKMIESDPS 120
  121 FASVLGIPTL QTGVFGGIIV GLIAAFCYNR FHDIEMPSFL GFFAGKRFVP IATAGCSFVI 180
  181 GILLMFIWPP VQDAMNSASY WLIEEGTYVA VFLFGFIKRL LIPFGLHHIF HAPFWYEFGS 240
  241 FETEAGNIVR GDMAIFFAQL KDGVEFTAGH FMAGEFPIMM FGLPAAALAM YHAAKPEKKK 300
  301 LVAGLLVSGA LTSFLTGITE PLEFSFMFLS PILFLIHALL DGLSFVLMTY FHVNIGFTFS 360
  361 GGAIDFVLFG ILPGQEPWWI TIILGLFFAI IYYFLFRYFI KKFNLLTPGR EESDDHKYSP 420
  421 SSEKSDLAFD VVEAIGGLQN ITHLDACITR LRVSVDSIQK VNKVRLKKIG ASGVLVVGNN 480
  481 VQAIFGPRSE TIKGQIQDII LGKVPRLGQE FEYPVVEEPI SVNDEIIVSP LTGQMIPITD 540
  541 VSDPVFSGKL MGEGFAIIPE DGTIVSPVDG EIIHIFPTNH AIGVQSEEGT EILIHAGLDT 600
  601 VNLNGKGFNI FVDENQFVKA GQALLKVDLD YLEKQGFSTV TPVVFTNIHD LAYIHLLEEK 660
  661 VEKGQSNIIA FKRVQ