YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23098679, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQERYDTQY EEQFQVHIEK VNTALQEGEI EVFRESFLDI HPYDQAMFFN QQDEEARGQI  60
   61 YTYLSPEEMS EILINIDLED VTAFFEEMDP RYAAMILAEM PTDDAVDVLN ELDKEKVASY 120
  121 LTIMDQESAN EIKQLLHYEE KTAGSIMTTE YVSIYNNMTV SETMRLLKTE APDAETIYYL 180
  181 FVLDGDKRLV GVLSIRDLII ADDETKIEEL MSTKVVAVSV AKDQEEVAQM FRDYDFLALP 240
  241 VVDFQDHLLG IITVDDILDV MEEEASEDYS MLAAMSNTDI KDDNAFRSAR KRLPWLVILL 300
  301 FLGMLTASLI GRFEDTLNQV AVLAIFIPLI AGMAGNSGTQ ALAVAVRGMA TGDYNNNDKW 360
  361 KLVGREAITG LITGTVCGSI LVLVIYLWQG NIYLGFLVGF SIMGSLIVAT LAGTLIPMFM 420
  421 NRLNIDPAVA SGPFITTIND LISILIYFGM ATTFMSYLI

Type	Start	End	Confidence
Cytoplasmic	1	292	0.98
Transmembrane Helix	293	313	0.91
Non-Cytoplasmic	314	320	0.84
Transmembrane Helix	321	346	0.84
Cytoplasmic	347	366	0.91
Transmembrane Helix	367	388	0.93
Non-Cytoplasmic	389	395	0.74
Transmembrane Helix	396	419	0.89
Cytoplasmic	420	431	0.79
Transmembrane Helix	432	451	0.87
Non-Cytoplasmic	452	459	0.66