YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23098611, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDSHLFYKK RLSSHIKNLS RYLRYIFNGH IAFAMFFFIS ATAYYYQQWL ANLPANFPTA  60
   61 IIIGIVFGLI VSYSPIRTLL QEPDLVFLIP AEKQMKNYFR NSLIYSFVIQ LYLVLLFAAA 120
  121 LAPLYFATFP EREGSMYFTT LAMLLLWKVA NLLANWWMLR VREPSIRRID LLTRTILNVV 180
  181 IFYFMIVGNM LMTVITVSLF IVVLIYDFWY SSKQAGILWD VLIEKDNNRM QSFYRIANMF 240
  241 AEVPHLKNRV KRRSWLVTLI VKGIPFSKEA TYAYLYRISY VRSGDYVGMY IRLVIIGGIF 300
  301 IWIMPNSWMK ILFGLLFLYL STFQMMSLYQ HHRTNIWLDI YPVPEPLKRD AVLSIIRQLG 360
  361 VIQSVLFSLL FLFLGDWLGF VIMLIVGVTF TIIFTQGYIR SKFQQTSNI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	44	0.89
Non-Cytoplasmic	45	54	0.78
Transmembrane Helix	55	76	0.85
Cytoplasmic	77	102	0.91
Transmembrane Helix	103	126	0.89
Non-Cytoplasmic	127	136	0.84
Transmembrane Helix	137	159	0.91
Cytoplasmic	160	178	0.85
Transmembrane Helix	179	205	0.89
Non-Cytoplasmic	206	285	0.75
Transmembrane Helix	286	304	0.85
Cytoplasmic	305	310	0.52
Transmembrane Helix	311	332	0.80
Non-Cytoplasmic	333	376	0.55
Transmembrane Helix	377	399	0.86
Cytoplasmic	400	409	0.89