YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23097725, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWISSIVIM AVITVGVVYY YLQSGDEKTN HSNHNTSMGG TLDVSSLVDA MSLDEKIGQL  60
   61 IVGGIDGTEI NTDTKDMIEN YHVGGVILFA DNIESKAQTV NLMNDIKQVN ENNPHPLLLG 120
  121 VDEEGGSVTR MPDEITSLPP SGSIGKAQDE ELAFEVGILL GQQMRGLGFN LNFAPVLDVN 180
  181 SNPDNPVIGD RSFGDSPDIV TDMGIQSMKG IQSEGIISVV KHFPGHGDTS EDSHLKLPKV 240
  241 DKSIEELSEV ELVPFEKAIS KGADVVMTAH ILLPQIDTEY PASMSEKIIS GLLREDMGFD 300
  301 GVVISDDLTM GAITENIRIE EAAIQSVKAG SDMVLIAHHP DVVVSVHKKL KAAVQNGVIS 360
  361 EAKIDESVER IIQLKRKYKL SNEETPQIDF QRINEKVEEI LDQVSSTFSF DEFLVYSKFM 420
  421 SIVL

Type	Start	End	Confidence
Cytoplasmic	1	4	0.42
Transmembrane Helix	5	22	0.49
Non-Cytoplasmic	23	424	0.98