YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22296131, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNPDLSTIQ LTKDDYERYS RHLILPEVGV EGQKRLKAAS VLCIGTGGLG SPLLLYLAAA  60
   61 GVGRLGIVDF DVVDSSNLQR QVIHGTSWVG KPKIESAKHR ILEINPYCQV DLYDTRLSAA 120
  121 NALEIMADYD IVVDGTDNFP TRYLVNDACV LLNKPNVYGS IFRFEGQATV FNYEGGPNYR 180
  181 DLYPEPPPPG LVPSCAEGGV LGILPGIIGV IQATETIKII LGKGTTLSGR LLLFNALEMK 240
  241 FRELKLRPNP ERPVIDKLID YEEFCGIRQA KAQEAAQMAE IPEMTVQELK ALMDSGAQDY 300
  301 VLVDVRNPNE YEIARIPGSV LVPLSEIENG PGVEKIRSLL NGHRLLVHCK MGGRSAKALG 360
  361 ILKEAGIEGI NIKGGINAWS QEVDPSVPTY

Type	Start	End	Confidence
Cytoplasmic	1	40	0.63
Transmembrane Helix	41	60	0.62
Non-Cytoplasmic	61	390	0.93