YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22299759, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILGMASQTG VLLLNLGGPD RPEDVRPFLY NLFSDPEIIR LPFRWLQKPL AWFISTSRAR  60
   61 RSQANYAQIG GGSPLRRITE QQARALKDAL EGIGIEANLY IGMRYWHPFT EEAIAQIKAD 120
  121 QIRELVILPL YPQFSISTSG SSFRLLESLW NQDPELQKIR YTLIPSWYNH PGYVAAMADL 180
  181 IRQELDRCPN PDEAVIFFSA HGVPKSYVTE AGDPYQEEIE ACVRLIMAAL NRPNAHVLAY 240
  241 QSRVGPVEWL QPYTEDVILE LAAQGVKTLV VVPISFVSEH IETLQEIDIE YREIAAEAGI 300
  301 EVFRRVPALN DHNGFISALA QLVKEALAAP PRTFAEVNQS RKRVKLYPQE RWEWGMTSAA 360
  361 ERWNGRLAML GFLALMIELI SGQGPLHMLG LL

Type	Start	End	Confidence
Cytoplasmic	1	362	0.75
Transmembrane Helix	363	386	0.70
Non-Cytoplasmic	387	392	0.78