YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22294948, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.97
Transmembrane Helix	69	90	0.90
Non-Cytoplasmic	91	103	0.77
Transmembrane Helix	104	120	0.93
Cytoplasmic	121	268	0.98
Transmembrane Helix	269	287	0.96
Non-Cytoplasmic	288	301	0.80
Transmembrane Helix	302	323	0.88
Cytoplasmic	324	726	0.97
Transmembrane Helix	727	746	0.85
Non-Cytoplasmic	747	755	0.57
Transmembrane Helix	756	773	0.61
Cytoplasmic	774	799	0.64
Transmembrane Helix	800	822	0.89
Non-Cytoplasmic	823	835	0.67
Transmembrane Helix	836	855	0.90
Cytoplasmic	856	870	0.65
Transmembrane Helix	871	890	0.94
Non-Cytoplasmic	891	898	0.58
Transmembrane Helix	899	921	0.92
Cytoplasmic	922	941	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSNASSNI DRDSVWHALS ADEAISHLGS DRQQGLSFAE VQRRQTQYGR NELVDNGRRP  60
   61 RWQIFTDQFR NVMLIMLLVV AFISGTLEIL ESLQENRIPL PKDATAILVV VILNAILGYV 120
  121 QEARAEEALA ALKNMAAPKV RVLREGKVMD IDSPELVVGD IFFLETGVKV AADGRLLETV 180
  181 NLQIREAALT GEAEAVSKDA AKILPIDTEV GDRANLVFAG TEVSQGRGVA VVTAIGMDTE 240
  241 LGKIAAALQG VEQEPTPLQK RMTELGNRLV GFSLVLVSIV VIAGGLYDPS LLRHLIEVSL 300
  301 SMAVAVVPEG LPAVITVTLA LGTQRMVKRH ALIRRLPAVE TLGSVTVICS DKTGTLTQNK 360
  361 MVVQAIATTS YRAKVSGNGY EPKGDFYDAN TDDPLALYER HLLLLAGALC NDALLKQHAA 420
  421 EWVILGDPTE GSLLPLAAKG GIDLKVLRET AERVAEFPFD ANRKRMSTFY RRESVPDLPA 480
  481 KEPYWMITKG SPELILERCQ WRQVGQDIQP LTLAERQEIL AENDRFAAQG LRVLGIAHRY 540
  541 WSELPPPESV ETSEQGLTWL GLVGILDPPR PEVLEAVATC RTAGIRPIMI TGDHQLTAQA 600
  601 IASQIGICEW GDPTLTGRTI EKMSSEELDA VTPTVSVYAR VSPEHKLRIV KSLQRHGEIV 660
  661 AMTGDGVNDA PALKQADIGV AMGITGTDVT KEASDMVLLD DNFATIVAAT EEGRVIYSNI 720
  721 RRFIRYILGS NIGEVITIAC SPLLGLGGVP LTPLQILWMN LVTDGLPALA LAVEPGDPDV 780
  781 MKRPPVKPNE SIFGRGLGSY MIRIGLILAL VGISLMVWAY SYASEHLEGG LDPRRWTTMV 840
  841 FTTLCLAQMG HALAARSSTR LTIEMNPTSN PFVWASVILT TILQLLLIYA PPLRQFFGTY 900
  901 LLSGTELAVC IGFSMLVFVW VELEKLVLRL FNKGQELKLL E