YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22298663, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRFELGRR KFLVYGSAAL GTSLLIKGCA PATETGGGGQ TPATGGDTIK VGILHSLSGT  60
   61 MAISEKSVVD ATQLAIEQIN QAGGVLGKQI QPILEDGASD WPTFAEKATK LIDQDKVVAV 120
  121 FGCWTSASRK AVLPVFESKN HMLWYPVQYE GQECSKNIFY TGAAPNQQIE PAVDWLLQNK 180
  181 GKKFFLVGSD YVFPRTANTI IKAQLAAKGG ETVGEDYLPL GNTEVTPIIT RIRNALPDGG 240
  241 VIFNTLNGDS NVAFFKQLQG AGLTPDKYPT MSVSIAEEEV QAIGVEYLKG HYAAWNYFMT 300
  301 VDTPENKSFV EAFKAKFGQN RVTNDPMEAA YIAVHLWKQA VEQAGTADDL EKVRQAAIGQ 360
  361 TFNAPEGPVK MFANHHISKT VRIGEVGEDG LFKIVYSTPQ PVDPLPWNQF VAETKGFACD 420
  421 WTRTDVDNPG KFKAAGA

Type	Start	End	Confidence
Signal Peptide	1	31	0.82
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	437	0.99