YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTNA_SYNEL
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTANVGTI FPVVWAGDRV QLIDQTRLPE QYELREITTA AEMATAIRTM IVRGAPAIGV  60
   61 AAAFGMVLGA REYRGSDREG FLIHLENIAS QLRQTRPTAV NLFWAIDRLL AAAQQPTPTL 120
  121 EELQQHLLET AQTIAREDVQ TCQAIGKNGL GVLPKTPEKL RLLTHCNAGA LATAGYGTAL 180
  181 GVVRAAWAAG RLERLYADET RPRLQGAKLT AWECVQEGIP VTLIADTMAA HCMQRGMIDA 240
  241 VVVGADRIAL NGDTANKIGT YSVALAAKAH NIPFFVAAPL STIDTSIATG AEIPIEERHP 300
  301 QEIYQVGFSR ITPAGVDFYN PAFDVTPAHL ISGIITELGV FAPVDLARGI GAVSG

Type	Start	End	Confidence
Cytoplasmic	1	49	0.64
Transmembrane Helix	50	70	0.64
Non-Cytoplasmic	71	355	0.88