YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22294708, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAALEILL VLLLIIANGI FAGAEIAVVS ARKVRLEQLA KRGKRKARAA LKLANSPNDF  60
   61 LSAVQIGITL IGILSGAVGG ATLAQRLQAV LSPVPWLGQY SQPLSIALVV TGITYLSLVM 120
  121 GELVPKRIAM TYPEAIACNI AKPMTWLTKL AAPIVHLLSV STDAILQVLG IATTADQTVT 180
  181 EDEIKVLIEQ GARAGLFEVA EQDMVTRIFN LGDRPIQSIM TPRTDIVWLD IESSLEEIEA 240
  241 EILASSHSRF PVAEETIDHC LGIISAKDFL AARLTQQTID LRQLVQPALF VPEGLPALDV 300
  301 LELFRQSSQH IALITDEYGG IEGLVTLNDL TEAIIGTLRH DEEEEPQIIQ REDGSLLLDG 360
  361 LISTYELKEL LRRETLPEED TANYHTLGGL IITLFGRIPQ SGDYIETDGL RFEVVDMDGN 420
  421 RVDKVLVTEL VSDDALADES DHKDES

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.71
Transmembrane Helix	8	29	0.80
Cytoplasmic	30	60	0.69
Transmembrane Helix	61	83	0.77
Non-Cytoplasmic	84	102	0.78
Transmembrane Helix	103	121	0.80
Cytoplasmic	122	151	0.66
Transmembrane Helix	152	166	0.34
Non-Cytoplasmic	167	446	0.61