YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21958700, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQLHLNHLN IGSSTPPIKE EKMTDVQQTS NQKKSDLAQD IADAEISRTL RKAKVSAAFR  60
   61 YIVLIIVGLL MLYPLLWMFS AAFKPNNEIF TTLGLWPEHP TSDGFINGWK TGTEYNFGHY 120
  121 MLNTFKYVIP KVILTIISST IVAYGFARFE IPWKKFWFTT LITTMLLPST VLLIPQYIMF 180
  181 REMGMLNSYL PLYLPLAFAT QGFFVFMLIQ FLRGVPRDME EAAQIDGCNS FQVLWYVVVP 240
  241 ILKPAIISVA LFQFMWSMND FIGPLIYVYS VDKYPIALAL KMSIDVTEGA PWNEILAMAS 300
  301 ISILPSIIVF FLAQRYFVQG VTSSGIKG

Type	Start	End	Confidence
Cytoplasmic	1	56	0.99
Transmembrane Helix	57	77	0.93
Non-Cytoplasmic	78	126	0.95
Transmembrane Helix	127	147	0.95
Cytoplasmic	148	155	0.91
Transmembrane Helix	156	178	0.92
Non-Cytoplasmic	179	191	0.86
Transmembrane Helix	192	212	0.94
Cytoplasmic	213	232	0.92
Transmembrane Helix	233	255	0.92
Non-Cytoplasmic	256	294	0.93
Transmembrane Helix	295	318	0.87
Cytoplasmic	319	328	0.95