YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167426675, gi...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDVSQILRL VASESALIAN LFNGYAKISP LTAFIRTIMM TGLSGKHIVL GISGGIAAYK  60
   61 SPELVRRLRD KGADVRVVMT HAAKAFIAPL TLQAVSGYPV SDDLLDPAAE AAMGHIELGK 120
  121 WADLVIIAPA TADLLARMAA GMANDLLTTV CLATAAPIAA VPAMNQQMYR APATQENLQT 180
  181 LSKWGVLLWG PDSGSQACGD IGPGRMLDPQ EIVALAYNHF SAKQDLQHLS VMITAGPTRE 240
  241 PLDPVRFISN QSSGKMGFAI AQALAARGSN VTLIAGPVNL STPEGVKRID VITALEMQQA 300
  301 VQKIAQQQNI FISCAAVADY RAEHVSDEKI KKQGDEITLK LVKNPDIVAG VASMAKNRPF 360
  361 VVGFAAETQN VEEYARQKLA RKNLDLICAN DVSLAEHGFN SDTNALHLFW STGEKRLPLS 420
  421 DKYLLSQRLI DEIVSRYDEK NRH

Type	Start	End	Confidence
Cytoplasmic	1	9	0.54
Transmembrane Helix	10	26	0.38
Non-Cytoplasmic	27	443	0.75