YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21646021, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDAQQISA LRRFSVSIIS VALLVISGTV GYMYLENMSL LDALYMTVIT VATVGFSEVR  60
   61 PLDDVGKIFT MVLIVGGTGI FFFTLTSVAV FFVSGEWKEH WEQQRNERML RKLNDHFIIC 120
  121 GYGRLGGSVA EELRAKAVPF VVIDNMIDNV LRARDEGFLA IKGNAADEEV LADAGLHRAK 180
  181 GLIAAAGNDA ENVFIVLTAR NLKPNLYIVA RADCDGSESK LRRAGAEKVV MLYRSAGKRM 240
  241 ASLLTEPELE EYLDELSNAN NLNLRIAQYL VGDNSPLVGK SFQEVDLYNN HRINVVGYKL 300
  301 PDGELHTTPR PAEIIQKNGT IIVIGKSDDL EMLCKLAQGE TQR

Type	Start	End	Confidence
Cytoplasmic	1	13	0.87
Transmembrane Helix	14	35	0.90
Non-Cytoplasmic	36	40	0.82
Transmembrane Helix	41	59	0.80
Cytoplasmic	60	68	0.70
Transmembrane Helix	69	93	0.89
Non-Cytoplasmic	94	343	0.86