YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LIP1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWLLVAVLT SLTIFSALTQ SHLLHGSPVN SLCADLIHPA NYSCTEHSIQ TKDGYILALQ  60
   61 RVASLGPRLQ SGPPVLLQHG LFMAGDVWFL NSPKESLGFI LADHGFDVWV GNVRGTRYSY 120
  121 GHVTLSDTDK EFWDWSWQDL AMYDLAEMIQ YLYSISNSKI FLVGHSQGTI MSFAALTQPH 180
  181 VAEMVEAAAL LCPISYLDHV TAPLVERMVF MHLDQMVVAL GLHQINFRSD MLVKLVDSLC 240
  241 EGHMDCTDFL TSITGTNCCF NASKIEYYLD YEPHPSSVKN IRHLFQMIRK GTFAQYDYGY 300
  301 FKNLRTYGLS KPPEFILSHI PASLPMWMGY GGTDGLADVT DVEHTLAELP SSPELLYLED 360
  361 YGHIDFVLGS SAKEDVYKHM IQFFRAKVKS SSW

Type	Start	End	Confidence
Signal Peptide	1	21	0.96
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	393	0.99