YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21401074, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDKNEIKNV VLSILCIFVF ALTACSSNTN GKEEGSGKLK VVTTYSIIYD MVKQIGGEKV  60
   61 EIHSLVPIGA NPHEYDPLPK DVMKMTDADM VLYNGLNLEE GGAWFKKLLK TANKSEKDAP 120
  121 VYKVSEGVEA IYLETKGLEK EPDPHAWMNI KNGILYAENV KKALIKEDPK NKEFYTKNAD 180
  181 NYVAELQKLH DETVNRIHQI PEEKRFLISS EGAFKYFGKA YDIKTGYIWE INSENQGTPD 240
  241 QIRDVVSVIQ TNKVPALFVE TSVDRRSMET VSKETNVPIA GTIFTDSLGK SGEDGDTYLK 300
  301 MMKWNIDTII NGLQK

Type	Start	End	Confidence
Signal Peptide	1	27	0.93
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	315	0.99