YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|65320089, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNRLLKQLQ NMKMNKKSLG AVALTAGIIG TTLIPQNTYA HGFVEKPGSR SALCSPTYGA  60
   61 LNVNCGSVMY EPQSLEAPKG FPQGGPVDGQ IASAGGKFGG ILDQQTADRW FKNTITGGEN 120
  121 TFTWKYTAXH LTSKWHYYIT KKXWNPNKAL TRADFEPIGT VQHDGSAASN HLTHKINVPT 180
  181 DRSGYHVILA VWDVADTANA FYNVIDVTLI NDVKPDTEAP SIPNGIQAQK VTANSIELAW 240
  241 TASTDNVGVK GYQIFRNGEM IDTVPGTHFI DKKLQPSTEY SYTVKAIDAA GNASKESAKL 300
  301 TVKTTVEAPD TEAPTQPKGL HSMGTTTSSV DLMWSPSDDN IGVGHYDIYR ETEGSMKKIA 360
  361 TSNTTSYMDK NLLPNTTYKY VVKAVDVAGN ESVQSDIFTI TTKTEGVSYE EWDAKKAYEK 420
  421 GDKVLHEGKV YEAVQSYKGN GDPNWIYALS LWKTV

Type	Start	End	Confidence
Signal Peptide	1	40	0.71
N-region	1	31
H-region	32	37
C-region	38	40
Cleavage Site	40	41
Non-Cytoplasmic	41	455	0.99