YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167734193, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHDHSHAPS EIRHETPLWW ALALTATFLV AEVIGAFVSN SLALLSDAAH MATDTLGLMI  60
   61 ALVAVRLSRR PADARRTYGY VRLEALGALV NGALLFGVGA YILWEAAQRF RAPQDISSNG 120
  121 MLLIAGLGLV INLIAMKLLH AGSGESLNVK GAYLEVWSDM LGSVAVIIGA LLIRWTGWQW 180
  181 IDPVLAVLIG LWVLPRTWVL LREAINVLLE GVPKGVDLAQ VRQALTGHPD VDDVHDLHVW 240
  241 ALASSTPALT AHVVVGETID RDRLRQTLGE LLHDRFDIAH VTLQVESGDC GADPCGTPST 300
  301 PAAAGEAHSH AHGQGAHHHS H

Type	Start	End	Confidence
Cytoplasmic	1	17	0.95
Transmembrane Helix	18	38	0.95
Non-Cytoplasmic	39	47	0.76
Transmembrane Helix	48	67	0.93
Cytoplasmic	68	84	0.79
Transmembrane Helix	85	104	0.93
Non-Cytoplasmic	105	119	0.84
Transmembrane Helix	120	140	0.90
Cytoplasmic	141	152	0.89
Transmembrane Helix	153	173	0.90
Non-Cytoplasmic	174	179	0.70
Transmembrane Helix	180	200	0.84
Cytoplasmic	201	321	0.95