YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21230421, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDMVLGVII LVSALLGLLR GFVAIVVGTL SWLLAGWATF LFGGPAARWL ADGKHPSATE  60
   61 SFGGYAMVFV GVLISVAVIG MVIRAGVDAV KLGGTDRMLG FGLGVVRGAF LACVLVLLMG 120
  121 FTPLPREPAW RQSVLLPVLS PGAGWMRAQL PAWRMPSMDL PSMELGNVSA ELGKLPSAGD 180
  181 NTDLGKALSG SGLSDRINKA LGKPGKAASD GRDPTQAMPA NIDPAQVRGG ESDPARVESQ 240
  241 GQARPPSQ

Type	Start	End	Confidence
Cytoplasmic	1	7	0.81
Transmembrane Helix	8	41	0.74
Non-Cytoplasmic	42	61	0.73
Transmembrane Helix	62	87	0.85
Cytoplasmic	88	98	0.77
Transmembrane Helix	99	122	0.88
Non-Cytoplasmic	123	128	0.69
Transmembrane Helix	129	148	0.60
Cytoplasmic	149	248	0.71