YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|188993027, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	42	0.94
Non-Cytoplasmic	43	50	0.86
Transmembrane Helix	51	70	0.95
Cytoplasmic	71	81	0.83
Transmembrane Helix	82	102	0.93
Non-Cytoplasmic	103	120	0.82
Transmembrane Helix	121	139	0.60
Cytoplasmic	140	147	0.59
Transmembrane Helix	148	166	0.82
Non-Cytoplasmic	167	169	0.47
Transmembrane Helix	170	191	0.69
Cytoplasmic	192	195	0.43
Transmembrane Helix	196	216	0.83
Non-Cytoplasmic	217	278	0.68
Transmembrane Helix	279	301	0.89
Cytoplasmic	302	311	0.94
Transmembrane Helix	312	334	0.87
Non-Cytoplasmic	335	347	0.73
Transmembrane Helix	348	370	0.91
Cytoplasmic	371	454	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDMSRQATR LDAIGGRYDP WLLGAAATLA SLGVVMVASS SIELSENPFY YLTRHLLFLG  60
   61 IGVGLAFWAM RTELKTIEQY NQVLLLACFG LLMVVFVPGL GSSVNGAKRW INLGVSKFQT 120
  121 VEAVKVLYIV WLSSYLVRFR DEVNATWPAM LKPLGVAIAL VGLLLMQPDF GSSTLLLAIT 180
  181 AGMLVLGGVN LPRMSMPIVF GLPVFAFIAI LEPYRLRRIT SFLDPWADQL GSGYQLSNAL 240
  241 MAVGRGQWTG VGLGASVQKL NYLPEAHTDF IFSVIAEELG FVGVCSVVAL YALLVGRAFW 300
  301 LGMRCVEMKR HFSGYIAFGI GLWISLQSFV SVGVNLGILP TKGLTLPLIS SGGSSVLMTC 360
  361 VAMGLLLRVS YEMDRAERLR SKLSPHGAAP APMAPVEPSA EPAPAPAPVR KPQRETAAAA 420
  421 PAPVMPASVA PASAVLRGTS RMQPRVEPTF GRIA