YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21229981, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	5	0.54
Transmembrane Helix	6	28	0.84
Non-Cytoplasmic	29	46	0.59
Transmembrane Helix	47	78	0.79
Cytoplasmic	79	91	0.65
Transmembrane Helix	92	109	0.79
Non-Cytoplasmic	110	116	0.69
Transmembrane Helix	117	138	0.89
Cytoplasmic	139	149	0.83
Transmembrane Helix	150	170	0.90
Non-Cytoplasmic	171	179	0.79
Transmembrane Helix	180	200	0.95
Cytoplasmic	201	218	0.93
Transmembrane Helix	219	239	0.93
Non-Cytoplasmic	240	246	0.76
Transmembrane Helix	247	268	0.93
Cytoplasmic	269	286	0.96
Transmembrane Helix	287	305	0.63
Non-Cytoplasmic	306	310	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQQTLWLFS GIALVLVVAT LISETLRWRA RAQPSAVLDN LVARIRAWWV MAGVVGIAFV  60
   61 FGRAGVIGLF ALVSLFALRE FITLTPTRRG DYYALLAAFY IVLPWQYGLV WTGWYGMYTL 120
  121 LIPVYAFLVL PILATIGGDT TRYLERTAKV QWGLMICVFC ISHVPALLNL EIPGYAGRNL 180
  181 LLIAFLVIVV QSSDVLQYVW GKLAGRHLIA PKLSPSKTVE GFIGGVLSAS LLGMALWWIT 240
  241 PFAPWHAFGL ALVANLMGFF GGLVMSAIKR DRGIKDWGHM IEGHGGVLDR LDSVCFAAPV 300
  301 FFHLIRYGWA