YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21228880, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQVFSTDQE YKADKSPENL FPLTEVTRKM EYEERFDQAV RVTGVGLFVN LGLTIFKLLA  60
   61 GILGNSTAMV ADAVHSLSDF LTDVVVIFGF KIAKKPVDES HNYGHGKIET LSASLVGLML 120
  121 LLVAGQILYY GVQKTLMFIE AGTLEQPAII ALYAALASVI SKEIMYQYTI LKARKINSMA 180
  181 LTANAWHHRS DAFSSFCTMI GIGAAVFLGG KWVVLDPLMA VFLSFIILKV SLKIFHSSIN 240
  241 ELVEASLDEK TESEIRQIIQ KTEGVKALSN LKTRRIGNNI AVDIRIKVDN ALDIGEANRI 300
  301 SIHVEHNLKK AFGPYTYVLV KAEPYEREPW GNPEDEKARE HPVNPEKNKV CLRNHSN

Type	Start	End	Confidence
Cytoplasmic	1	38	0.97
Transmembrane Helix	39	61	0.82
Non-Cytoplasmic	62	72	0.66
Transmembrane Helix	73	92	0.78
Cytoplasmic	93	109	0.85
Transmembrane Helix	110	130	0.93
Non-Cytoplasmic	131	148	0.79
Transmembrane Helix	149	166	0.89
Cytoplasmic	167	189	0.78
Transmembrane Helix	190	208	0.90
Non-Cytoplasmic	209	212	0.58
Transmembrane Helix	213	232	0.76
Cytoplasmic	233	357	0.84