YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21227031, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.65
Transmembrane Helix	6	24	0.84
Cytoplasmic	25	30	0.69
Transmembrane Helix	31	50	0.86
Non-Cytoplasmic	51	56	0.71
Transmembrane Helix	57	76	0.86
Cytoplasmic	77	87	0.72
Transmembrane Helix	88	109	0.91
Non-Cytoplasmic	110	114	0.74
Transmembrane Helix	115	133	0.96
Cytoplasmic	134	149	0.86
Transmembrane Helix	150	170	0.91
Non-Cytoplasmic	171	185	0.74
Transmembrane Helix	186	207	0.87
Cytoplasmic	208	215	0.88
Transmembrane Helix	216	249	0.85
Non-Cytoplasmic	250	268	0.71
Transmembrane Helix	269	287	0.93
Cytoplasmic	288	293	0.64
Transmembrane Helix	294	316	0.90
Non-Cytoplasmic	317	323	0.57
Transmembrane Helix	324	345	0.68
Cytoplasmic	346	353	0.67
Transmembrane Helix	354	375	0.85
Non-Cytoplasmic	376	695	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDYLLANVD VILGFAVVIL TIFYRFEFPP ILGFLVTGML IGPYGLGILS GGEIDMTSEL  60
   61 GVVFLLFTIG VDLSLNDLWK MKKAIMGGGV LQILFTTTLA FIICTWIGFS SSTSIFIGLL 120
  121 ISLSSTAIVL KVFQDKNEVD TPHGKTSLAI LIFQDLAIVP LILITPILAG SSISFDGAFS 180
  181 NIFFKGSLII FVFILSSRFL VPWIFYCVGR TGSKQLFLVS VVFICLSAAV FTSSIGLSLA 240
  241 LGAFLAGIVI SGSQYSHQAM GNILPLKDMF MSFFFVSIGM LLNISYLLDH LPLLALAAVA 300
  301 LIIIKSIAGM LITIILGYPL RTTIITGLAL SQVGEFSFVL SKLGLEYSLL SKETYQAFLA 360
  361 VSIITMGVTP FLINASYRPA EFFVKKASDS VYGMKLVRGF CSGSFEWKEC VEPEIKDHLI 420
  421 MVGFGFSGKT ISKAAKAAGI PYIILETNPD IVKQEKTKGE RIQYGDATFG AVQEHAGIRN 480
  481 ARVLITGISD SVATRKIVEK AKELNPNIYV IAKVRNLQEM KHLHHLGADE IIPEEYETSV 540
  541 EIFVRLLEKY LVPRENIEKM INDLRANGYR RLRKLSVDQD TDNEFSIKDE LPGVEIQVLK 600
  601 VGKGSGFDGK TLAEMEFRKK HGVTVLSVRR GSEMIHTPEG DFLLKAKDAC VLLGKPESLL 660
  661 NVRKLFESIT GEVRPSFQSG SKIELIPKPD SFPHN