YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20809035, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVGSESYK FLLFLKEYQK NLIAFLFALF LGLAFVVYEN GFAYNVLVDG VSIGVTRDVE  60
   61 GVKRVVEEIK KEEMQKWGDV VFDQEISFER IRVSGERVKD AREIEASLKK ILSLTCKAYA 120
  121 IEVNGKPVAF LKSKEEAYKT LEDLKSEYKK DADKIYFKEE IKIKSKYISP TKLVEEKEAL 180
  181 EILRKPLKEA VTYEVKENDS LWSIAREHDM YIQDILKLNP GLTENLKPGQ IIYLSKEVPL 240
  241 VTVVTEKEVT YKEEIPFNTK FTKDDKLFVN QSKVLVEGEK GLKEIKAVVI SHNGVEVKRD 300
  301 IKEERVLKEP ISKIVAVGSR RVSYVATGYF SYPARGTITS RFGPRWGGFH TGVDIAARYG 360
  361 SPIYASDGGT VIFAGWESGY GYLVKIDHHN GYVTYYGHAS KLLVKVGDKV EKGQKIALVG 420
  421 ATGHATGPHV HFEVRKNGVP IDPMRFLGR

Type	Start	End	Confidence
Cytoplasmic	1	20	0.75
Transmembrane Helix	21	38	0.77
Non-Cytoplasmic	39	449	0.98