YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20517596, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.89
Transmembrane Helix	130	152	0.89
Non-Cytoplasmic	153	165	0.80
Transmembrane Helix	166	189	0.87
Cytoplasmic	190	199	0.70
Transmembrane Helix	200	224	0.85
Non-Cytoplasmic	225	246	0.80
Transmembrane Helix	247	267	0.95
Cytoplasmic	268	276	0.80
Transmembrane Helix	277	302	0.75
Non-Cytoplasmic	303	324	0.79
Transmembrane Helix	325	349	0.83
Cytoplasmic	350	362	0.83
Transmembrane Helix	363	382	0.65
Non-Cytoplasmic	383	386	0.54
Transmembrane Helix	387	407	0.82
Cytoplasmic	408	424	0.37
Transmembrane Helix	425	447	0.85
Non-Cytoplasmic	448	452	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIVAVTAC PTGIAHTYMA AENLQMAAKE MGVDIKVETQ GSIGAENALT EEDIREADAV  60
   61 IIAASTKVDK SRFAGKPVLE VGVEDAIKDA KGLIEKALKM EKPTDYVEKV QEIHKERAAQ 120
  121 RTGAYKHLMT GVSYMIPFVV AGGILIALSF FWGYKAFEVE GTLPWALMRI GGGSAFALMV 180
  181 PILSGYIAFS IADRPGLVPG MVGGMLAVST GAGFLGGIIS GFLAGYTVDY LKKLIKLPRT 240
  241 LEGLMPVLIL PVLSTLIVGL LMIYVIGSPM KAIMTSLTNW LTGMSSTNAV IFRAILGLMM 300
  301 AFDMGGPVNK TAYTFATGLL GSNVFTPMAA VMAAGMTPPL GLALATVLFK DRFTKDEIEA 360
  361 GKAAWVLGAS FITEGAIPFA AADPFRVIPS IMVGSAVTGA LSMLFHIELR APHGGIFVIP 420
  421 IAVSNPLLYI GVIAVGTVVT ALMVALLKKK VE