YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20808918
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNRLFKKL FISNIIIVAI TLAVVSIMFY IMFQNYYFAE KEKIMLEEAQ EINAILNEFA  60
   61 VGDINLDKWN QELNVVTRLI NATVWIVDKE GLVYSQSQQG KPWMKITLSK ADIQNILKGE 120
  121 SIVKKGYFGG AFTSPVLTVG VPLVIKGHIE GAIFMHASLE EMNRTVLNIF LLMLLSGGMA 180
  181 FVVSFILISY TSNRISEPLK KMSLAAREIA KGNFSARVDH FEEDEIGDLA RSFNVMAREL 240
  241 AQLEDMRKEF VANVSHELRS PITSIQGYID GILDGTIPKE KTYDYLKVVQ EETRRMSRLI 300
  301 NDLLEMTKLE SGEFPLNRTE FDINELIRIC IIKFEKRIVE KDLTVKVDFE EDRRFVFADR 360
  361 DKIEQVLTNL IDNAIKFSKP KGIIHLFTEV KGDKVFITVK DNGIGISPED LEHIWERFYK 420
  421 ADKSRGKDGA GLGLYIVKKI IEAHKEEIWA ESELKKGTSF TFTLPIKKV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	31	0.94
Non-Cytoplasmic	32	126	0.97
Transmembrane Helix	127	149	0.81
Cytoplasmic	150	165	0.87
Transmembrane Helix	166	188	0.94
Non-Cytoplasmic	189	469	0.97