YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20808867
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDRKVDSK MPPIPHMGRG GGPRALVRGA EKAKDFKGTM KKFIKYLSEY KISIITVILL  60
   61 AILSTSFSIA GPKILSKAIT KIFEGVMNRI TGQGSGIDFE YIGRIILILI GLYGLSALFG 120
  121 YLQGWIMSGV AMKVTYKFRR EISEKINRLP LKYFEGTNQG EILSRITNDV DTITQTLNQS 180
  181 LTQIITSVTT VIGVLIMMLT INWLMTLVAL LIIPLSSLVI AFIVKYSQKY FREQQDYLGH 240
  241 VNGHVEEMYG GHHIVKAFNG EKKSIAKFDE LNSTWYDAAW KSQFLTGVMM PLMNVIGNLG 300
  301 YVAVTVLGSW LVIKNAIEVG DIQAFIQYIR SFTQPIAQIA NISNILQQTA ACAERVFEFL 360
  361 EEEEEVPDNP KPIKLEDIKG DVEFRNVKFG YRPDKIVINN FSAKIKAGQK VAIVGPTGAG 420
  421 KTTIVKLLMR FYDVNEGAIL IDGHDIREFS REDLRSLFGM VLQDTWLYNG TIMDNIRYGR 480
  481 LDATDEEVIK AAKAAHVHSF VKSLPGGYNM MINEESTNIS QGQKQLITIA RAILKDPKIL 540
  541 ILDEATSSVD TLTEIQIQKA MDYLMKGRTS FIIAHRLSTI KDADLILVMD HGDIVEQGTH 600
  601 EELLKKGGFY AKLYNSQFER EEEQLVS

Type	Start	End	Confidence
Cytoplasmic	1	49	0.95
Transmembrane Helix	50	70	0.90
Non-Cytoplasmic	71	101	0.89
Transmembrane Helix	102	125	0.86
Cytoplasmic	126	180	0.90
Transmembrane Helix	181	201	0.70
Non-Cytoplasmic	202	204	0.51
Transmembrane Helix	205	224	0.88
Cytoplasmic	225	289	0.67
Transmembrane Helix	290	313	0.64
Non-Cytoplasmic	314	627	0.83