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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|20808818
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKANLKIT GMSCAACATK IEKGLKSLDG VLDANVNLAV EKATVIYDPD KINICDIEKK  60
   61 IEDIGYGVIK DKVELALMGM SCASCAAKIE KTLKNLPGVS NASVNFAAET AIVEYDSNEI 120
  121 DTEKMIKAIK DIGYDAKEKT GVGIDTEKEI KEREINTLRK LVIYSAILTV PLVISMVLRM 180
  181 FKISGGILDN PWLQVFLSSP VQFIVGFRYY KGAWNNLKNM TANMDTLVAM GTSAAYFYSL 240
  241 YNVFTKPSHE IHNYLYFEAS AVIITLVTLG KLLEAIAKGK TSEAIKNLMG LQAKTARVIR 300
  301 DGQELDIPIE EVKVGDIVVV RPGEKIPVDG KIVEGSSTID ESMITGESIP VEKGVGDEVI 360
  361 GATINKTGTF KFEATKVGKD TVLSQIIKMV EDAQGSKAPI QQIADKISGI FVPTVIAIAA 420
  421 TTFLIWYFGY GDFNAGIINA VSVLVIACPC ALGLAVPTSV MVGTGKGAEN GILIKGGEHL 480
  481 QRAGKITAIV FDKTGTITKG EPEVTDIVTF GDFTEDEILK IAGIAEKNSE HPLGQAIVNK 540
  541 AKEKFKILED PEKFEAVPGY GICITINEKE FYIGNRRLMD RQNIDITSIE DKVEELELQG 600
  601 KTAMILASHD RVYGIIAVAD TVKSDSAKAI QKLQAMGIEV YMITGDNKRT AEAIAKQVGI 660
  661 KNVLAEVLPE HKALEIMKLQ KMGKVVAMVG DGINDAPALA TADVGIAIGT GTDVAIETSD 720
  721 ITLLSGNLMG IVTAIKLSKA TMRNIYQNLF WAFVYNTIGI PFAAMGLLTP AIAGGAMAFS 780
  781 SVSVVTNALR LRRFKV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle