YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20516881, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.94
Non-Cytoplasmic	42	74	0.92
Transmembrane Helix	75	96	0.90
Cytoplasmic	97	103	0.84
Transmembrane Helix	104	126	0.89
Non-Cytoplasmic	127	139	0.82
Transmembrane Helix	140	161	0.93
Cytoplasmic	162	169	0.84
Transmembrane Helix	170	193	0.85
Non-Cytoplasmic	194	211	0.76
Transmembrane Helix	212	233	0.79
Cytoplasmic	234	263	0.59
Transmembrane Helix	264	287	0.85
Non-Cytoplasmic	288	300	0.52
Transmembrane Helix	301	320	0.74
Cytoplasmic	321	323	0.39
Transmembrane Helix	324	348	0.86
Non-Cytoplasmic	349	354	0.42

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQLILEAVP ESYNRYIRRK IWIILLTILT TFLLAVYAIN AGSAGLSVKD VVKTLVGQGE  60
   61 ERFRIIVWNI RMPRILSAMM AGVGLSVAGC VTQSILRNPL ASPFTLGISQ GAAFGAAVAI 120
  121 ILFGAGSTTN PDSVIINNPY LVVIFAFLGS MGSTVVVLML AKNFRVTPEA MVLAGVALGS 180
  181 LFSAITMILQ YFADDVKVAS IVFWTFGDLG RASWRDLTIM SVVVGISLIY FMLNRWNYNA 240
  241 LDSGEETAKG LGVEVEKIRL YGMFMSSLVA AVITSFVGII GFVGLVGPHI MRRLIGGDHR 300
  301 FLIPASSAIG ALILLASDTL GRTIISPIVL PVGAITSFLG APVFLYVLSR GYRR