YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20808271, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	296	0.99
Transmembrane Helix	297	317	0.90
Non-Cytoplasmic	318	330	0.81
Transmembrane Helix	331	350	0.88
Cytoplasmic	351	356	0.75
Transmembrane Helix	357	380	0.88
Non-Cytoplasmic	381	401	0.92
Transmembrane Helix	402	424	0.84
Cytoplasmic	425	436	0.80
Transmembrane Helix	437	459	0.89
Non-Cytoplasmic	460	466	0.77
Transmembrane Helix	467	487	0.93
Cytoplasmic	488	523	0.98
Transmembrane Helix	524	545	0.88
Non-Cytoplasmic	546	619	0.55
Transmembrane Helix	620	642	0.91
Cytoplasmic	643	650	0.61
Transmembrane Helix	651	673	0.89
Non-Cytoplasmic	674	680	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKMGVLEGR KELVVALAGN PNSGKTSLFN ELTGSRQHVG NWPGVTVEKK EGRLKFEGID  60
   61 FKVVDLPGTY SLGAYTEDEV IARNFIIYDK PDVVINVVDA TNLERNLYLT MQLLEMNANL 120
  121 VIALNMSDEA KAKGIEIDKD KLSQILKVPV VMTVATKGEG VKELLENVLK AVEFKGERYR 180
  181 IDYGKELEEG ISELESLIKE DEELSKKFFP RWLAIKFIEN DENIMKEFSS KTALMEKVKL 240
  241 IQKKLEGIFG EDAEVVVADK RYGVISGIVK ECVKKRSTPE ERYTLSDRID RIVTNKYLGI 300
  301 PIFLVAMWAV FEFTFALGNP LSDWIEMFFD WLGEVTASWL LSIAAPDILI SFIRDGIIAG 360
  361 VGSVLVFIPP IFLLFFAISV LEDSGYMARA AYVMDRFMTA LGLHGKSFIP MLIGFGCNVP 420
  421 GIMATRTLEN KEDRLVTILV NPLMSCAARL PVYVLFAGAF FAENQGLVVF SIYLLGIVLA 480
  481 VIMAKIFKKF LFKGKTAPFV MELPPYRVPT LKGLLIHMWE RGSLFVRKAG TIILGVVVLV 540
  541 WILSSLPAGV EYASAESYIG RLGSAVAPIL KPAGFGTWEA ASALIFGILA KETVVGTLGV 600
  601 VYGAEGDALF EAIRQHFTPL SAYAFMVMTL IYIPCVATIA AIRRETNSWK WTFFAIGYTL 660
  661 VLGWLMAVLV YQGGRILGLG