YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20808073, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	32	0.91
Non-Cytoplasmic	33	48	0.82
Transmembrane Helix	49	68	0.90
Cytoplasmic	69	74	0.70
Transmembrane Helix	75	95	0.93
Non-Cytoplasmic	96	110	0.72
Transmembrane Helix	111	126	0.46
Cytoplasmic	127	141	0.52
Transmembrane Helix	142	176	0.74
Non-Cytoplasmic	177	185	0.49
Transmembrane Helix	186	208	0.86
Cytoplasmic	209	226	0.88
Transmembrane Helix	227	247	0.86
Non-Cytoplasmic	248	266	0.89
Transmembrane Helix	267	289	0.90
Cytoplasmic	290	300	0.86
Transmembrane Helix	301	323	0.89
Non-Cytoplasmic	324	337	0.84
Transmembrane Helix	338	359	0.93
Cytoplasmic	360	368	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKPPVDYG ILLVVMILVA IGVVMVFSAS AATAEYMYND PYYFLKRQLV WAILGFFAMV  60
   61 FTMNVDYLWF KRWAGAFLVI SIVLLVLVLI PGIGVERYNA TRWIGVGNFT VQPSEIAKYA 120
  121 LIIYLAKYFD KHPEYAKSLK KGVIPVLGLA GVFFGLIMLQ PNFSTAGIIF IVSVVMLFVA 180
  181 GAKLSYMGIL LGTGLGVAVL VISSFKYVRE RVLTFLNPWQ DIQKSGYQIV QSLYALGSGG 240
  241 LFGVGLGNSR QKLMYLPMPH NDFIFSIIGE ELGLVGTVTI LLMFLYIILR GLRVAAKAPD 300
  301 MFGCLLATGI TSLIGIQAFI NVAVVTSSMP PTGVSLPFIS YGGTSTLIMM AGVGILLNIS 360
  361 RHANLDRS