YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20515978, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSRNLIDSF NYAIEGILHV FKTQRNMKIH FAIAIAVLFF CLFLDLTRVE FVIILFTISL  60
   61 VLIAEMINTA IETTIDMLVR NYNPMAKIAK NVAAGAVLIA AVNSVLVAYL IFFDRVNPWT 120
  121 KIVLVKIRES PIHVTVISIL VVVFLTLILK VYFKKGTPMR GGMPSAHSAI AFSVATAITF 180
  181 MTANAFISTL SFLLALMVAE SRVEGKIHTF SQVFVGAILG ILFTVLIFQI IR

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	46	0.91
Non-Cytoplasmic	47	51	0.75
Transmembrane Helix	52	71	0.93
Cytoplasmic	72	91	0.81
Transmembrane Helix	92	113	0.95
Non-Cytoplasmic	114	131	0.90
Transmembrane Helix	132	153	0.94
Cytoplasmic	154	168	0.85
Transmembrane Helix	169	195	0.83
Non-Cytoplasmic	196	207	0.82
Transmembrane Helix	208	231	0.88
Cytoplasmic	232	232	0.93