YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20515846, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKALGGIV ILALVFAIVL ASLFLTQPST ESQKTVSSNT IGVVTIEGVI GDFSNILGIP  60
   61 QFTPDPVEQI RRAQEDNTVK AIVVKINSPG GSAAKSVEIY TELKRLKETG KKVIVSMGDA 120
  121 AASGGYMAAC GGDIIVANPA TITGSIGVIM QYTNYEGLYD KLGLKEITIK SGPYKDMGSP 180
  181 TRDLTPEEKK ILQGIIDDTY EQFVEIVSEG RKMPIEKVKE LADGRIFTGR QALKVGLVDK 240
  241 LGDFYDAVDI AAKEAGIQGK PVLKYYTTPN PLSILFGGGA KSNLEGTGLE ILRLLFIDKW 300
  301 SLNYK

Type	Start	End	Confidence
Signal Peptide	1	32	0.92
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	305	0.99