YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20515560, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGTIVNSIA IIVGGTIGTL LKVGIPDRFK NIVMQGVALS VAIIGISSGL QFNNLMLVIM  60
   61 SLVIGGVIGE ALDIEGYLNR LGDTLQRKLS KDNGSTISKG FVTASLVYCV GAMAIVGSLK 120
  121 EGLSGDHSIL FAKSVLDGIS SIIFASTFGV GVIFSAISVF LYQGFITVGA SFLQGLLIKP 180
  181 VIDDMTAVGG ILIFAISLNM LEIKSIKVGN LLPSIFIPIF YQLILNLIR

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.76
Transmembrane Helix	5	25	0.80
Cytoplasmic	26	31	0.81
Transmembrane Helix	32	52	0.83
Non-Cytoplasmic	53	56	0.58
Transmembrane Helix	57	78	0.63
Cytoplasmic	79	96	0.57
Transmembrane Helix	97	119	0.83
Non-Cytoplasmic	120	138	0.51
Transmembrane Helix	139	166	0.80
Cytoplasmic	167	175	0.42
Transmembrane Helix	176	201	0.73
Non-Cytoplasmic	202	205	0.40
Transmembrane Helix	206	228	0.73
Cytoplasmic	229	229	0.56