YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20515538, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREAVIVSAV RTAIGKFGGS LAGIPVVDLG AIVIKEALKR AKVAPEQVDE VFMGIILQAG  60
   61 LGQNPARQSA VKAGIPVEVP ATTINMVCGS GLRTVAMAAQ AVMLGDADIV VAGGMESMSR 120
  121 APYLLRDARW GYRMNMPSGE LVDEMVYDGL WDVFNQYHMG ITAENIAERY KISRQEQDEF 180
  181 ALRSQNLAEA AIKAGKFEEE IVPVPIPQKK GDPIEFKVDE HPRFGTTMED LAKLKPAFKP 240
  241 DGTVTAGNAS GINDGAAAVV VMSRDKAKEL GVTPLATIKS YAYAGVDPAV MGLGPIYSTR 300
  301 KALDKAGLKI EDIDLIEANE AFAAQAIAVA RELNFDMEKV NVNGGAIALG HPIGASGARI 360
  361 LVTLLHEMKR RGSRLGLATL CIGGGMGISM IVEM

Type	Start	End	Confidence
Non-Cytoplasmic	1	343	0.68
Transmembrane Helix	344	363	0.59
Cytoplasmic	364	372	0.78
Transmembrane Helix	373	392	0.87
Non-Cytoplasmic	393	394	0.84