YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19888338, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	29	0.89
Non-Cytoplasmic	30	45	0.80
Transmembrane Helix	46	66	0.89
Cytoplasmic	67	83	0.85
Transmembrane Helix	84	107	0.89
Non-Cytoplasmic	108	123	0.78
Transmembrane Helix	124	144	0.95
Cytoplasmic	145	164	0.85
Transmembrane Helix	165	189	0.74
Non-Cytoplasmic	190	267	0.60
Transmembrane Helix	268	287	0.66
Cytoplasmic	288	308	0.88
Transmembrane Helix	309	330	0.89
Non-Cytoplasmic	331	340	0.79
Transmembrane Helix	341	361	0.91
Cytoplasmic	362	371	0.84
Transmembrane Helix	372	392	0.93
Non-Cytoplasmic	393	396	0.83
Transmembrane Helix	397	421	0.85
Cytoplasmic	422	428	0.89
Transmembrane Helix	429	450	0.86
Non-Cytoplasmic	451	459	0.76
Transmembrane Helix	460	481	0.89
Cytoplasmic	482	519	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLKLVKGS LTVLVGSLFL RLGGYVYRLL VGRLLGPDGY GIVSSTMVIQ TIVMFLATFG  60
   61 VPPAVARYVA KYHALGEGTK VRQFIVIPTL VLVALSTLAA LILALTAPYL ASWYFHNPRL 120
  121 YTPLLIMAIG LPFAAFASCV RGVFQGFQDM RRYVLTQFVE QGTRVGGAPA LILAGYGPAG 180
  181 AVFASATLAY ATSGLYGAAK LRSEYLPKIP REGEPLPSDR VAKDALTFGL PVALTGIADM 240
  241 IQSNVDLLAI GYFLGTLWVG YYDAAGPIAR LPTTLCAAVA TALLPAASEA EALKDERTLR 300
  301 QYAHIAIKTM WTLLIPVAVL TGALAEPLIT LFFGPAFRPG AQALYVLPTA MAFIVVFRSC 360
  361 ASLLQGIGRE RLPLVVLSFS LVANVVLNAI MVPKWGIFGA SVATAISDWL AMILIVRAVM 420
  421 VHAKAHLKLR WALVPVIAGV AAWLTTEWSM LFTNGALLKL LLGSAVGTLT YSILLVVLGG 480
  481 VSDLEWELLE KGARRVGSPG IVRVVRLARS LDILGRIKP