YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19918362, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTHILRKIV FMAPVFLFIS IVSFSLIYVT PGDPAEIILT SSSGGADPAA VEEFRIKEGF  60
   61 DKPLYVQYLN WLGDVLHGEL GYSYMSERPV SEAILQAFSA TLKLAIASFL VSLVISIPAG 120
  121 ILAALKRDTW IDDLSRLFAL LGVSMPNFWQ GYLMILVFAV FLRILPAGGF GENGDFLHLI 180
  181 LPMLTLGTSS AAITMRLTRS SFLEVLQEDY IYAARAKGLS EKVVIGKHAL KNAMIPVITM 240
  241 AGLNFGYLLN GSAVVETVFA WPGLGNLIVN SIYNRDYPMI QGTLLFVAVL FVTINLLVDL 300
  301 SYSYLDPRIR DEIQD

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	103	0.97
Transmembrane Helix	104	125	0.93
Cytoplasmic	126	145	0.76
Transmembrane Helix	146	165	0.86
Non-Cytoplasmic	166	175	0.83
Transmembrane Helix	176	197	0.90
Cytoplasmic	198	236	0.93
Transmembrane Helix	237	260	0.78
Non-Cytoplasmic	261	278	0.84
Transmembrane Helix	279	300	0.89
Cytoplasmic	301	315	0.84