YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19915022, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLELSVVIP AYNEEENIEP CYREITSALE PLGINYEIIF VDDGSKDSTF KELQNLSKND  60
   61 NKLKVIKFRK NFGQSAALRA GLDHAAGRII VTMDADLQND PKDIPKLLEK LEKEDLDVVC 120
  121 GWRFDRKDPL SKKFVSKFAN RLRTRFTGET IHDSGCTLRA YVKESTEDLE LYGELHRYIP 180
  181 AMLSWKGYRI GEIKTNHRER KYGKTKYDWK RIVKGFLDLL VVTFWQKYSL RPIHIFGSMG 240
  241 IVLSFFGGIV SLYIVILRLF YGIGITDRPL FTVSVMSLVI GIQFFTIGIL ADILVKIYYG 300
  301 QNGRKNYLVE RIIE

Type	Start	End	Confidence
Cytoplasmic	1	234	0.79
Transmembrane Helix	235	257	0.92
Non-Cytoplasmic	258	269	0.62
Transmembrane Helix	270	295	0.81
Cytoplasmic	296	314	0.65