YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20089997, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.93
Transmembrane Helix	19	40	0.93
Non-Cytoplasmic	41	79	0.89
Transmembrane Helix	80	101	0.90
Cytoplasmic	102	107	0.81
Transmembrane Helix	108	127	0.91
Non-Cytoplasmic	128	131	0.61
Transmembrane Helix	132	153	0.86
Cytoplasmic	154	160	0.81
Transmembrane Helix	161	185	0.88
Non-Cytoplasmic	186	206	0.83
Transmembrane Helix	207	229	0.89
Cytoplasmic	230	249	0.79
Transmembrane Helix	250	276	0.88
Non-Cytoplasmic	277	293	0.77
Transmembrane Helix	294	313	0.79
Cytoplasmic	314	321	0.52
Transmembrane Helix	322	340	0.83
Non-Cytoplasmic	341	349	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSTRTALD FFEARKLSIM LFLAVVVVAG GMVTICLGTY KISMPEVYTI IATHLFSPDN  60
   61 VDSLNKLRNT IVWNIRFPRV ITAITVGIGL SVAGAIYQGC FRNPLVEPYI LGVSSGAAFG 120
  121 AALGIVYPHI FISIQVSAFV FASLSVFLAY TLARNRGQTP VVTLVLAGII IGSIFGACVS 180
  181 IMKYISDDTQ LREIVFWMMG GFYYTTWNDV YLTVPVVLIS VAIMWFFGWK LNVLSMGDEE 240
  241 ARALGVNPEI FKFIFIVLAT LVTAVCVSSV GIIAWVGLMM PHAARLIQGP DNRFVIPTAA 300
  301 LMGGVYIIFC DTIARTLTSA EIPIGIITSI VGAPYLIYLL RSKEKEIFG