YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19748536, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLNVILVG LLSILMLSLA IVFINRWKLN EDSQRIVLAE KKKNTSDLVI KAVKHIKKDQ  60
   61 KDYYYFSPIK QADDFFVDNL PVSLYKKKNS DKELILVKPK LQSSHLRSVN TLTISKIVYQ 120
  121 KKFFHLAKKS EKVISTYHVT DNLKPFQVKD LVSGHLERIQ EEVEKKYPNA GFNSDKYNGL 180
  181 KESNSLLSDG FEVKSGNLIF DKKLTIPLTT LFDVINPDFL ANSDRAAYDN YRTYKEQHPK 240
  241 KLVALTFDDG PDPTTTPQVL DILAKYQAKG TFFMIGSKVV NNENLTKRVS DAGHEIANHT 300
  301 WDHPNLTNLS VSEIQHQVNM TNQAIEKACG KKPRYLRPPY GATNATVQQS SGLTQMLWTV 360
  361 DTRDWENHST DGIMTNVKNQ LQPGGVVLMH DIHQTTINAL PTVMEYLKAE GYECVTVSEL 420
  421 YAHQ

Type	Start	End	Confidence
Signal Peptide	1	20	0.94
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	424	0.99