YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19703719, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.97
Transmembrane Helix	10	32	0.92
Non-Cytoplasmic	33	68	0.93
Transmembrane Helix	69	88	0.95
Cytoplasmic	89	97	0.84
Transmembrane Helix	98	120	0.92
Non-Cytoplasmic	121	142	0.91
Transmembrane Helix	143	165	0.89
Cytoplasmic	166	193	0.89
Transmembrane Helix	194	215	0.92
Non-Cytoplasmic	216	248	0.97
Transmembrane Helix	249	271	0.91
Cytoplasmic	272	295	0.91
Transmembrane Helix	296	316	0.88
Non-Cytoplasmic	317	352	0.95
Transmembrane Helix	353	375	0.94
Cytoplasmic	376	386	0.85
Transmembrane Helix	387	407	0.92
Non-Cytoplasmic	408	412	0.83
Transmembrane Helix	413	433	0.90
Cytoplasmic	434	466	0.96
Transmembrane Helix	467	488	0.89
Non-Cytoplasmic	489	518	0.90
Transmembrane Helix	519	540	0.95
Cytoplasmic	541	550	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMLSKKKDI WIVISLCVLA FYIIFMIYPL GILFKNAVIE NNGNFTFAYF SKFLSKNYYF  60
   61 STIFNSFKVS LAATALTLII GTPLAYFYNM YKIKGKTFLQ ITIILCSMSA PFIGAYSWIL 120
  121 LLGRNGLITN AIKNLTGFNV PSIYGFGGIL LVLCLQLYPL VFLYVSGALR NIDNSLLEAS 180
  181 ENMGCTGTKR FFKIIIPLCI PTILAAALMV FMRAFADFGT PLFIGEGYRA FPVEIYNQFM 240
  241 NETGSDKNFA SAVSIIAIII TSLIFLLQRY INGKYKFTMN ALHPIEAKEV KGIKSVLIHL 300
  301 YCYLVVFISY APQLYVIYTS FQNTSGKLFT KGYSLKSYTE AFSKVGNAIQ NTFFIGGLAL 360
  361 ILIIVISILI AYLVVRRNNF VNRTIDTLSM VPYVIPGSVV GIALVSAFNK KPFVLVGTFL 420
  421 IMVISLIIRR NAYTIRSSVA ILQQIPISIE EAAISLGASR MKSFFKITTP MMINGIISGA 480
  481 LLSWITIITE LSSSIILYNY KTITLTLQIY VYVSRGSYGI AAAMSTILTM MTVVSLLIFM 540
  541 KVSKNKNVMM