YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19713352, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	31	0.92
Non-Cytoplasmic	32	37	0.71
Transmembrane Helix	38	56	0.93
Cytoplasmic	57	76	0.81
Transmembrane Helix	77	99	0.89
Non-Cytoplasmic	100	109	0.73
Transmembrane Helix	110	130	0.92
Cytoplasmic	131	138	0.68
Transmembrane Helix	139	162	0.84
Non-Cytoplasmic	163	195	0.78
Transmembrane Helix	196	216	0.85
Cytoplasmic	217	235	0.72
Transmembrane Helix	236	257	0.86
Non-Cytoplasmic	258	310	0.69
Transmembrane Helix	311	335	0.79
Cytoplasmic	336	350	0.77
Transmembrane Helix	351	372	0.77
Non-Cytoplasmic	373	433	0.60
Transmembrane Helix	434	455	0.89
Cytoplasmic	456	476	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKGKVKPS LFVAVLPFVF LIVVMLIGNI VYGAPAQLPL ILGIAFTCIL GHFLGYSYQE  60
   61 IEDSMIETNK MGLQANFIML IVGCLIGSWI IGGVVPGMIY YGLKLFTPRI FLIILPIMCA 120
  121 IISVSTGSAW TTAGTMGTAA MGIGVGMGIP APLVAGAVVT GASFGDKLSP LSDSTNLAAA 180
  181 TAEAGLFDHV RHMLKTTIPS FLIALLIYAF LGRNFGSANI NSEAIESITS TLASNFKITP 240
  241 LIFIPPIIII VIIFLKVPPV PGMLIGTLAG VGMCFYQGVN LQTILVALYE GPSIETGNAI 300
  301 VDKLLNRGGM LFMMETISLV ICALAFGGAI KSIGCIDTII ETVLKHLRRR GSIVTSNVLM 360
  361 CILCNFAAAD QYMSIVIPGQ MYKKVYKKLN LAPENLSRTL EDAGTLTSGL VPWSTCGAVY 420
  421 LATLGVSAFQ YGRFHILGLV NPIVAIIYAY LLIFLNPLDK SKPIKDRLTD EDLKEL