YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18978408, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDIKKVTQT IITLKFNFSA VVSRMEEPRI TVFAYSEDKF EEKRIKAIKD ALNYKDYKVV  60
   61 WVNIESIAYL KDLKEIFKLH DVVIKLILRA KTRSRILILN DYIFVLLYQV YKIKGGLKRE 120
  121 KTAIFLKDNF IITVQEQPGD VFNSIRESIR HGELAYRRKG ADHLFFALLD AIIENYISIL 180
  181 EDVSKQMEEI ETKVLKGEGK EVLQKIHGIR RRILFLRRTI FPLLEIFRRL RLEGKEFFSE 240
  241 ETQNYLGELY EHVMEILDII ENNREMANGL IDIYYSTLSI RTNEIMRILT VVSTIFIPLT 300
  301 FVTGIYGMNF NPQASPYNMP ELNWYYGYPA VLLAMLTIGI GMVYYFKRKG WL

Type	Start	End	Confidence
Cytoplasmic	1	287	0.98
Transmembrane Helix	288	308	0.94
Non-Cytoplasmic	309	324	0.94
Transmembrane Helix	325	346	0.94
Cytoplasmic	347	352	0.95