YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18977731, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAHVSIVVP TYNRKKKLQQ CLKALINQNY PKERYEIVVV DDGSTDGTYE FLQETRKEIQ  60
   61 NLRVLRQRNK GPAAARNLGI KNAQGEIVFF VDDDVIVPNN WIKEFLNVFR KYPEVAAVSG 120
  121 YVEASEEVLR KNIFAQYEAY MSRLAYNMPR TIYIGSFETF GGATCNVAYK REVLEEVGGF 180
  181 DETFPVAAGE DADLKLRVAL KGYKFAFIPL KAIHIQDYTL KGFWKQQVNR GIGNYYFRKK 240
  241 WQSFFNKDEL KNIRAAPNYN IPRMILKDGK LLMLALFLIA VIANRYGQIK ARKILKKEEE 300
  301 K

Type	Start	End	Confidence
Non-Cytoplasmic	1	270	0.93
Transmembrane Helix	271	287	0.62
Cytoplasmic	288	301	0.54