YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18893429, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEMLNLATK FYEDEYKDSI LYTYLGNSEK DPKLREEFLR LSKIESNHAR FWHEFLIKRG  60
   61 RTPKKPKINK INLFFVKLLR KLLGPGIIVS LLEMGENSAI QKYFNFLTKY QLSEEERKIL 120
  121 SKVILDELEH ERFFHESKKR FHTENIRDFV LGMNDGLVEL LGAVTGLSAV YLHNPRVVGI 180
  181 SGLIVGVAGA LSMGIGAFIS VRSQRQVNES VRQRMEVLFK VSPEKAKEEL SRKLLETGIP 240
  241 EEVVEEVVEK LSSNEDALIN LLVQESGENE LRSALYTGLA YLTGVAFPVL PYFIASSSLT 300
  301 ALPFSILLAG TALAIVASVI SAISGISIKK KVVEMISTGL GAAFLSYLFG RLMESLFHIS 360
  361 TL

Type	Start	End	Confidence
Cytoplasmic	1	148	0.93
Transmembrane Helix	149	171	0.82
Non-Cytoplasmic	172	178	0.77
Transmembrane Helix	179	201	0.91
Cytoplasmic	202	273	0.98
Transmembrane Helix	274	295	0.91
Non-Cytoplasmic	296	301	0.80
Transmembrane Helix	302	325	0.88
Cytoplasmic	326	331	0.84
Transmembrane Helix	332	353	0.81
Non-Cytoplasmic	354	362	0.80