YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18977095, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGQFLITFR EALEAAIIVA IIIAYLKRTD REEQIRDVWI GVGLSVLASV VLGAIILGLY  60
   61 GGIEEKELFE GIASYLAVIV LTSMIYWMAT KGRNIRAEIE RKVSKAINPL ALVGFTFIVV 120
  121 FREGLETVLF LTPFAIQDLG GTLMGLVSGI IGALILAYLI YGVGMRINLR TFFYYSSILL 180
  181 VFVAAGLAGY GTHELIEWAE EEGMNLGFIE ETAYNLGIPE DSVFHHKGVI GSIFAVLFGY 240
  241 SVKMEWGRVI VQFGYLIVTL YLVLRAYGQE TPTAKAEK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.86
Transmembrane Helix	7	26	0.86
Cytoplasmic	27	37	0.89
Transmembrane Helix	38	60	0.94
Non-Cytoplasmic	61	70	0.77
Transmembrane Helix	71	90	0.94
Cytoplasmic	91	105	0.92
Transmembrane Helix	106	125	0.88
Non-Cytoplasmic	126	140	0.78
Transmembrane Helix	141	162	0.93
Cytoplasmic	163	170	0.88
Transmembrane Helix	171	191	0.93
Non-Cytoplasmic	192	222	0.95
Transmembrane Helix	223	242	0.77
Cytoplasmic	243	248	0.71
Transmembrane Helix	249	268	0.65
Non-Cytoplasmic	269	278	0.52