YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18891964, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSVIIPTY NERENLEELF SRIDNALQGL NYEIVVVDDD SPDRTWEKAQ ELSSKYPVKV  60
   61 IRRTKEKGLS SAVIRGFKEA SGDVFVVMDA DLQHPPEVIP KLIEAIKNGS DIAIGSRYVK 120
  121 GGKVENWPFY RKLISKGAIM VGRIALPKIR DIKDPVSGFF ALRKEVVEGV ELNPIGFKIL 180
  181 MEILIKGKYS KVVEVPFTFG IRARGESKLK GKTIFEYLRH IYRLMKWEGE IDRIVKFSIV 240
  241 GLSGILVNEG FLWLFVNLGI PKEIAVIPAV ELSILNNFFW NDIWTFKDIR RGSIFSRLLK 300
  301 FHIAALSGAV VNFIVYWILL FLGIHYLIAN LVGIVLSFGV RYVINRHVTW AT

Type	Start	End	Confidence
Cytoplasmic	1	233	0.97
Transmembrane Helix	234	256	0.87
Non-Cytoplasmic	257	263	0.77
Transmembrane Helix	264	284	0.84
Cytoplasmic	285	297	0.94
Transmembrane Helix	298	319	0.91
Non-Cytoplasmic	320	325	0.67
Transmembrane Helix	326	344	0.95
Cytoplasmic	345	352	0.91