YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.88
Transmembrane Helix	39	58	0.88
Cytoplasmic	59	70	0.76
Transmembrane Helix	71	90	0.89
Non-Cytoplasmic	91	96	0.71
Transmembrane Helix	97	116	0.89
Cytoplasmic	117	131	0.83
Transmembrane Helix	132	153	0.85
Non-Cytoplasmic	154	181	0.57
Transmembrane Helix	182	205	0.80
Cytoplasmic	206	214	0.58
Transmembrane Helix	215	237	0.87
Non-Cytoplasmic	238	283	0.56
Transmembrane Helix	284	306	0.83
Cytoplasmic	307	321	0.46
Transmembrane Helix	322	336	0.79
Non-Cytoplasmic	337	337	0.01
Transmembrane Helix	338	352	0.52
Cytoplasmic	353	361	0.49
Transmembrane Helix	362	384	0.79
Non-Cytoplasmic	385	389	0.47
Transmembrane Helix	390	410	0.90
Cytoplasmic	411	417	0.51
Transmembrane Helix	418	438	0.86
Non-Cytoplasmic	439	464	0.63
Transmembrane Helix	465	481	0.55
Cytoplasmic	482	528	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPKSGGDP LPHPPKEQLP DISYCITSPP PWPEAVLLGF QHYLVMLGTT VLIPSALVPQ  60
   61 MGGRNEEKAK LIQTILFVAG LNTLLQTVFG TRLPAVIGAS YTFVPVTISI MLSGRFNDVA 120
  121 DPVERFKRII RATQGALIVA STLQIILGFS GLWRNVVRFL SPLSAAPLVG LVGYGLYELG 180
  181 FPGVAKCIEI GLPGLIILIL ISQYMPHVIK GGKHVFARFA VIFSVAIVWL YAFFLTLGGA 240
  241 YNGVGTDTQR SCRTDRAGLI SAAPWIRVPW PFQWGAPLFD AGEAFAMMMA SFVALVESTG 300
  301 AFIAVSRYAS ATMPPPSVIS RGVGWQGVAI LISGLFGTGI GSSVSVENAG LLALTKIGSR 360
  361 RVVQISAGFM IFFSILGKFG AVFASIPSPI IAALYCLFFA YVGAGGLSLL QFCNLNSFRT 420
  421 LFILGFSIFL GLSIPQYFNE HTAIKGYGPV HTGARWFNDM VNVPFSSKAF VGGCVAYLLD 480
  481 TTLHKKDGSI RKDRGKHWWD RFWTFKNDPR TEEFYALPFN LNKYFPSV